Index

A

add() (ReplayCache method) (Schedule method) add_to_loss_dict() (in module celldetection.util.util) AdditiveNoise2d (class in celldetection.models.commons) AdditiveNoise3d (class in celldetection.models.commons) all_filter() (in module celldetection.mpi.mpi) ap (LabelMatcher property)

append_hash_to_filename() (in module celldetection.util.util) args() (Config method) asnumpy() (in module celldetection.util.util) avg_ap (LabelMatcherList property) avg_f1 (LabelMatcherList property) avg_precision (LabelMatcherList property) avg_recall (LabelMatcherList property)

B

BackboneAsUNet (class in celldetection.models.unet) base64_to_image() (in module celldetection.util.util) batched_box_nms() (in module celldetection.ops.cpn) batched_box_nmsi() (in module celldetection.ops.cpn) BBBC039Test (class in celldetection.data.datasets.bbbc039) BBBC039Train (class in celldetection.data.datasets.bbbc039) BBBC039Val (class in celldetection.data.datasets.bbbc039) BBBC041Test (class in celldetection.data.datasets.bbbc041) BBBC041Train (class in celldetection.data.datasets.bbbc041) bias (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute)

BottleneckBlock (class in celldetection.models.commons) boxes2masks() (in module celldetection.data.segmentation) BoxFilter2d (class in celldetection.models.filters) BoxNpllLoss (class in celldetection.models.loss) Bytes (class in celldetection.util.util)

C

celldetection module celldetection.callbacks.dropout module celldetection.data module celldetection.data.cpn module celldetection.data.datasets module celldetection.data.datasets.bbbc039 module celldetection.data.datasets.bbbc041 module celldetection.data.datasets.synth module celldetection.data.instance_eval module celldetection.data.misc module celldetection.data.segmentation module celldetection.data.toydata module celldetection.models module celldetection.models.commons module celldetection.models.convnext module celldetection.models.cpn module celldetection.models.filters module celldetection.models.fpn module celldetection.models.loss module celldetection.models.manet module celldetection.models.mobilenetv3 module celldetection.models.normalization module celldetection.models.resnet module celldetection.models.smp module celldetection.models.timmodels module celldetection.models.unet module celldetection.mpi module celldetection.mpi.mpi module celldetection.ops module celldetection.ops.boxes module celldetection.ops.commons module celldetection.ops.cpn module celldetection.ops.draw module celldetection.ops.loss module celldetection.ops.normalization module celldetection.optim.lr_scheduler module celldetection.util.schedule module celldetection.util.timer module

celldetection.util.util module celldetection.visualization.cmaps module celldetection.visualization.images module channels_first2channels_last() (in module celldetection.data.misc) channels_last2channels_first() (in module celldetection.data.misc) clip_contour_() (in module celldetection.data.cpn) compute_loss() (CPN method) conf2augmentation() (in module celldetection.util.schedule) conf2call() (in module celldetection.util.schedule) conf2optimizer() (in module celldetection.util.schedule) conf2scheduler() (in module celldetection.util.schedule) conf2tweaks_() (in module celldetection.util.schedule) Config (class in celldetection.util.schedule) configs (Schedule property) contours (CPNTargetGenerator property) contours2boxes() (in module celldetection.data.cpn) (in module celldetection.ops.boxes) contours2labels() (in module celldetection.data.cpn) contours2properties() (in module celldetection.data.cpn) ConvNeXt (class in celldetection.models.convnext) ConvNeXtBase (class in celldetection.models.convnext) ConvNeXtBaseFPN (class in celldetection.models.fpn) ConvNeXtBaseUNet (class in celldetection.models.unet) ConvNeXtLarge (class in celldetection.models.convnext) ConvNeXtLargeFPN (class in celldetection.models.fpn) ConvNeXtLargeUNet (class in celldetection.models.unet) ConvNeXtSmall (class in celldetection.models.convnext) ConvNeXtSmallFPN (class in celldetection.models.fpn) ConvNeXtSmallUNet (class in celldetection.models.unet) ConvNeXtTiny (class in celldetection.models.convnext) ConvNeXtTinyFPN (class in celldetection.models.fpn) ConvNeXtTinyUNet (class in celldetection.models.unet) ConvNorm (class in celldetection.models.commons) ConvNormRelu (class in celldetection.models.commons) copy_script() (in module celldetection.util.util) count_submodules() (in module celldetection.util.util) CPN (class in celldetection.models.cpn) CpnConvNeXtBaseUNet (class in celldetection.models.cpn) CpnConvNeXtLargeUNet (class in celldetection.models.cpn) CpnConvNeXtSmallUNet (class in celldetection.models.cpn) CpnConvNeXtTinyUNet (class in celldetection.models.cpn) CpnMiTB5MaNet (class in celldetection.models.cpn) CpnMobileNetV3LargeFPN (class in celldetection.models.cpn) CpnMobileNetV3SmallFPN (class in celldetection.models.cpn) CpnResNet101FPN (class in celldetection.models.cpn) CpnResNet101UNet (class in celldetection.models.cpn) CpnResNet152FPN (class in celldetection.models.cpn) CpnResNet152UNet (class in celldetection.models.cpn) CpnResNet18FPN (class in celldetection.models.cpn) CpnResNet18UNet (class in celldetection.models.cpn) CpnResNet34FPN (class in celldetection.models.cpn) CpnResNet34UNet (class in celldetection.models.cpn) CpnResNet50FPN (class in celldetection.models.cpn) CpnResNet50UNet (class in celldetection.models.cpn) CpnResNeXt101FPN (class in celldetection.models.cpn) CpnResNeXt101UNet (class in celldetection.models.cpn) CpnResNeXt152FPN (class in celldetection.models.cpn) CpnResNeXt152UNet (class in celldetection.models.cpn) CpnResNeXt50FPN (class in celldetection.models.cpn) CpnResNeXt50UNet (class in celldetection.models.cpn) CpnResUNet (class in celldetection.models.cpn) CpnSlimU22 (class in celldetection.models.cpn) CpnSmpMaNet (class in celldetection.models.cpn) CpnSmpUNet (class in celldetection.models.cpn) CPNTargetGenerator (class in celldetection.data.cpn) CpnTimmMaNet (class in celldetection.models.cpn) CpnTimmUNet (class in celldetection.models.cpn) CpnU22 (class in celldetection.models.cpn) CpnWideResNet101FPN (class in celldetection.models.cpn) CpnWideResNet50FPN (class in celldetection.models.cpn) CpnWideU22 (class in celldetection.models.cpn)

D

Dict (class in celldetection.util.util) dict() (GpuStats method) dict2model() (in module celldetection.util.util) dict_hash() (in module celldetection.util.util) dilation (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute)

download_bbbc039() (in module celldetection.data.datasets.bbbc039) download_bbbc041() (in module celldetection.data.datasets.bbbc041) download_synth() (in module celldetection.data.datasets.synth) downsample_labels() (in module celldetection.ops.commons) draw_contours_() (in module celldetection.ops.draw)

E

EdgeFilter2d (class in celldetection.models.filters) elementwise_affine (LayerNorm1d attribute) (LayerNorm2d attribute) (LayerNorm3d attribute) ensure_num_tuple() (in module celldetection.util.util) ensure_tensor() (in module celldetection.data.misc) eps (LayerNorm1d attribute) (LayerNorm2d attribute) (LayerNorm3d attribute)

exponential_moving_average_() (in module celldetection.util.util) extra_repr() (Config method) (IoULoss method) (MinibatchStdLayer method) (Normalize method) ExtraUNetBlock (class in celldetection.models.unet)

F

f1 (LabelMatcher property) (LabelMatcherList property) false_negative_labels (LabelMatcher property) false_negatives (LabelMatcher property) false_positive_labels (LabelMatcher property) false_positives (LabelMatcher property) feed() (CPNTargetGenerator method) fetch_image() (in module celldetection.util.util) fetch_model() (in module celldetection.util.util) fill_label_gaps_() (in module celldetection.data.segmentation) fill_padding_() (in module celldetection.data.segmentation) Filter2d (class in celldetection.models.filters) filter_and_threshold() (LabelMatcher method) filter_by_box_voting() (in module celldetection.ops.boxes) filter_contours_by_intensity() (in module celldetection.data.cpn) filter_contours_by_stitching_rule() (in module celldetection.ops.cpn) filter_instances_() (in module celldetection.data.segmentation) forward() (BackboneAsUNet method) (BoxNpllLoss method) (CPN method) (EdgeFilter2d method) (ExtraUNetBlock method) (Filter2d method) (GeneralizedUNet method) (IntermediateUNetBlock method) (IoULoss method) (MinibatchStdLayer method) (MultiscaleFusionAttention method) (NoAmp method) (Normalize method) (PixelNorm method) (PositionWiseAttention method) (ReadOut method) (SigmoidFocalLoss method) (SmpEncoder method) (SpatialSplit method) (SqueezeExcitation method) (TimmEncoder method) (UpFilter2d method)

fourier (CPNTargetGenerator property) fouriers2contours() (in module celldetection.ops.cpn) FPN (class in celldetection.models.fpn) freeze_() (in module celldetection.util.util) freeze_submodules_() (in module celldetection.util.util) from_h5() (in module celldetection.util.util) from_json() (Config static method) (in module celldetection.util.util) (Schedule static method) frozen_params() (in module celldetection.util.util) Fuse1d (class in celldetection.models.commons) Fuse2d (class in celldetection.models.commons) Fuse3d (class in celldetection.models.commons)

G

gaussian_kernel() (in module celldetection.util.util) GaussianFilter2d (class in celldetection.models.filters) GeneralizedUNet (class in celldetection.models.unet) get_axes() (in module celldetection.visualization.images) get_comm() (in module celldetection.mpi.mpi) get_device() (in module celldetection.util.util) get_hosts() (in module celldetection.mpi.mpi) get_kernel1d() (PascalFilter2d static method) get_kernel2d() (BoxFilter2d static method) (GaussianFilter2d static method) (LaplaceFilter2d static method) (PascalFilter2d static method) (ScharrFilter2d static method) (SobelFilter2d static method) get_local_comm() (in module celldetection.mpi.mpi) get_lr() (WarmUp method) get_multiples() (Schedule method) get_nd_batchnorm() (in module celldetection.util.util)

get_nd_conv() (in module celldetection.util.util) get_nd_dropout() (in module celldetection.util.util) get_nd_linear() (in module celldetection.util.util) get_nd_max_pool() (in module celldetection.util.util) get_nn() (in module celldetection.util.util) get_pos_labels() (in module celldetection.data.instance_eval) get_rate() (StepDropout static method) get_resnet() (in module celldetection.models.resnet) get_scale() (in module celldetection.ops.cpn) get_tiling_slices() (in module celldetection.util.util) get_warmup_factor() (in module celldetection.util.util) GpuStats (class in celldetection.util.util) groups (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute)

H

hash() (Config method)

hash_file() (in module celldetection.util.util)

I

image_to_base64() (in module celldetection.util.util) imshow() (in module celldetection.visualization.images) imshow_col() (in module celldetection.visualization.images) imshow_grid() (in module celldetection.visualization.images) imshow_row() (in module celldetection.visualization.images) in_channels (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute)

inject_extra_repr_() (in module celldetection.util.util) IntermediateUNetBlock (class in celldetection.models.unet) interpolate_vector() (in module celldetection.ops.commons) intersection_mask() (in module celldetection.data.instance_eval) iou_loss() (in module celldetection.ops.loss) iou_thresh (LabelMatcher property) (LabelMatcherList property) IoULoss (class in celldetection.models.loss) is_empty() (ReplayCache method) iter_submodules() (in module celldetection.util.util)

K

kernel_size (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute)

kwargs() (Config method)

L

label_cmap() (in module celldetection.visualization.cmaps) LabelMatcher (class in celldetection.data.instance_eval) LabelMatcherList (class in celldetection.data.instance_eval) labels2counts() (in module celldetection.data.instance_eval) labels2crops() (in module celldetection.data.misc) labels2properties() (in module celldetection.data.misc) labels2property_table() (in module celldetection.data.misc) labels_exist() (in module celldetection.data.instance_eval) LaplaceFilter2d (class in celldetection.models.filters)

LayerNorm1d (class in celldetection.models.commons) LayerNorm2d (class in celldetection.models.commons) LayerNorm3d (class in celldetection.models.commons) load() (Config method) (Schedule method) load_image() (in module celldetection.util.util) load_model() (in module celldetection.util.util) locations (CPNTargetGenerator property) log_margin_loss() (in module celldetection.ops.loss) lookup_nn() (in module celldetection.util.util)

M

MaNet (class in celldetection.models.manet) margin_loss() (in module celldetection.ops.loss) masks2labels() (in module celldetection.data.cpn) matching_labels() (in module celldetection.data.instance_eval) minibatch_std_layer() (in module celldetection.ops.commons) MinibatchStdLayer (class in celldetection.models.commons) MobileNetV3Large (class in celldetection.models.mobilenetv3) MobileNetV3LargeFPN (class in celldetection.models.fpn) MobileNetV3LargeUNet (class in celldetection.models.unet) MobileNetV3Small (class in celldetection.models.mobilenetv3) MobileNetV3SmallFPN (class in celldetection.models.fpn) MobileNetV3SmallUNet (class in celldetection.models.unet) model2dict() (in module celldetection.util.util) module celldetection celldetection.callbacks.dropout celldetection.data celldetection.data.cpn celldetection.data.datasets celldetection.data.datasets.bbbc039 celldetection.data.datasets.bbbc041 celldetection.data.datasets.synth celldetection.data.instance_eval celldetection.data.misc celldetection.data.segmentation celldetection.data.toydata celldetection.models celldetection.models.commons celldetection.models.convnext celldetection.models.cpn celldetection.models.filters celldetection.models.fpn celldetection.models.loss celldetection.models.manet celldetection.models.mobilenetv3 celldetection.models.normalization celldetection.models.resnet celldetection.models.smp celldetection.models.timmodels celldetection.models.unet celldetection.mpi celldetection.mpi.mpi celldetection.ops celldetection.ops.boxes celldetection.ops.commons celldetection.ops.cpn celldetection.ops.draw celldetection.ops.loss celldetection.ops.normalization celldetection.optim.lr_scheduler celldetection.util.schedule celldetection.util.timer celldetection.util.util celldetection.visualization.cmaps celldetection.visualization.images

MultiscaleFusionAttention (class in celldetection.models.manet)

N

nms() (in module celldetection.ops.boxes) NoAmp (class in celldetection.models.commons) Normalize (class in celldetection.models.commons) normalize_percentile() (in module celldetection.data.misc) normalized_shape (LayerNorm1d attribute) (LayerNorm2d attribute) (LayerNorm3d attribute)

NormProxy (class in celldetection.util.util) num_bytes() (in module celldetection.util.util) num_params() (in module celldetection.util.util)

O

on_train_batch_start() (StepDropout method) on_train_epoch_start() (StepDropout method) order_weighting() (in module celldetection.ops.cpn) out_channels (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute)

output_padding (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute)

P

pad_to_div() (in module celldetection.data.misc) (in module celldetection.ops.commons) pad_to_size() (in module celldetection.data.misc) (in module celldetection.ops.commons) padded_stack2d() (in module celldetection.ops.commons) padding (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute) padding_mode (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute)

padding_stack() (in module celldetection.data.misc) pairwise_box_iou() (in module celldetection.ops.boxes) pairwise_generalized_box_iou() (in module celldetection.ops.boxes) PascalFilter2d (class in celldetection.models.filters) Percent (class in celldetection.util.util) pixel_norm() (in module celldetection.ops.normalization) PixelNorm (class in celldetection.models.normalization) plot_box() (in module celldetection.visualization.images) plot_boxes() (in module celldetection.visualization.images) plot_contours() (in module celldetection.visualization.images) plot_mask() (in module celldetection.visualization.images) plot_score() (in module celldetection.visualization.images) plot_text() (in module celldetection.visualization.images) PositionWiseAttention (class in celldetection.models.manet) precision (LabelMatcher property) print_timing() (in module celldetection.util.timer) print_to_file() (in module celldetection.util.util) product (Schedule property)

Q

query() (in module celldetection.mpi.mpi)

quiver_plot() (in module celldetection.visualization.images)

R

r1_regularization() (in module celldetection.ops.loss) random_circle() (in module celldetection.data.toydata) random_code_name() (in module celldetection.util.util) random_code_name_dir() (in module celldetection.util.util) random_colors_hsv() (in module celldetection.visualization.cmaps) random_crop() (in module celldetection.data.misc) random_ellipse() (in module celldetection.data.toydata) random_geometric_objects() (in module celldetection.data.toydata) random_rectangle() (in module celldetection.data.toydata) random_seed() (in module celldetection.util.util) random_triangle() (in module celldetection.data.toydata) ReadOut (class in celldetection.models.commons) recall (LabelMatcher property) recv() (in module celldetection.mpi.mpi) reduce_loss() (in module celldetection.ops.loss) reduce_loss_dict() (in module celldetection.util.util) reduced_labels (CPNTargetGenerator property) reduction (BoxNpllLoss attribute) (IoULoss attribute) (SigmoidFocalLoss attribute) refinement_bucket_weight() (in module celldetection.ops.cpn) rel_location2abs_location() (in module celldetection.ops.cpn) relabel_() (in module celldetection.data.segmentation) remove_border_contours() (in module celldetection.ops.cpn) remove_padding() (in module celldetection.data.segmentation) remove_partials_() (in module celldetection.data.segmentation) render_contour() (in module celldetection.data.cpn) replace_module_() (in module celldetection.util.util) ReplayCache (class in celldetection.models.commons) resample_contours() (in module celldetection.data.misc)

ResBlock (class in celldetection.models.commons) reset_parameters() (Filter2d method) ResNet101 (class in celldetection.models.resnet) ResNet101FPN (class in celldetection.models.fpn) ResNet101UNet (class in celldetection.models.unet) ResNet152 (class in celldetection.models.resnet) ResNet152FPN (class in celldetection.models.fpn) ResNet152UNet (class in celldetection.models.unet) ResNet18 (class in celldetection.models.resnet) ResNet18FPN (class in celldetection.models.fpn) ResNet18UNet (class in celldetection.models.unet) ResNet34 (class in celldetection.models.resnet) ResNet34FPN (class in celldetection.models.fpn) ResNet34UNet (class in celldetection.models.unet) ResNet50 (class in celldetection.models.resnet) ResNet50FPN (class in celldetection.models.fpn) ResNet50UNet (class in celldetection.models.unet) ResNeXt101_32x8d (class in celldetection.models.resnet) ResNeXt101FPN (class in celldetection.models.fpn) ResNeXt101UNet (class in celldetection.models.unet) ResNeXt152_32x8d (class in celldetection.models.resnet) ResNeXt152FPN (class in celldetection.models.fpn) ResNeXt152UNet (class in celldetection.models.unet) ResNeXt50_32x4d (class in celldetection.models.resnet) ResNeXt50FPN (class in celldetection.models.fpn) ResNeXt50UNet (class in celldetection.models.unet) resolve_label_channels() (in module celldetection.data.cpn) resolve_refinement_buckets() (in module celldetection.ops.cpn) ResUNet (class in celldetection.models.unet) rgb_to_scalar() (in module celldetection.data.misc) rle2mask() (in module celldetection.data.misc)

S

sampled_contours (CPNTargetGenerator property) sampled_sizes (CPNTargetGenerator property) sampling (CPNTargetGenerator property) save_fetchable_model() (in module celldetection.util.util) save_fig() (in module celldetection.visualization.images) scale_contours() (in module celldetection.ops.cpn) scale_fourier() (in module celldetection.ops.cpn) ScaledSigmoid (class in celldetection.models.commons) ScaledTanh (class in celldetection.models.commons) ScharrFilter2d (class in celldetection.models.filters) Schedule (class in celldetection.util.schedule) send() (in module celldetection.mpi.mpi) serve() (in module celldetection.mpi.mpi) show_detection() (in module celldetection.visualization.images) SigmoidFocalLoss (class in celldetection.models.loss) sink() (in module celldetection.mpi.mpi) SlimU22 (class in celldetection.models.unet) SmpEncoder (class in celldetection.models.smp) SmpFPN (class in celldetection.models.fpn) SmpMaNet (class in celldetection.models.manet) SmpUNet (class in celldetection.models.unet) SobelFilter2d (class in celldetection.models.filters)

SpatialSplit (class in celldetection.models.commons) spectral_norm_() (in module celldetection.util.util) split_spatially() (in module celldetection.ops.commons) SqueezeExcitation (class in celldetection.models.commons) stack_labels() (in module celldetection.data.segmentation) start_timer() (in module celldetection.util.timer) StepDropout (class in celldetection.callbacks.dropout) stop_timer() (in module celldetection.util.timer) stride (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute) Stride1d (class in celldetection.models.commons) Stride2d (class in celldetection.models.commons) Stride3d (class in celldetection.models.commons) strided_upsampling2d() (in module celldetection.ops.commons) SynthTest (class in celldetection.data.datasets.synth) SynthTrain (class in celldetection.data.datasets.synth) SynthVal (class in celldetection.data.datasets.synth)

T

tensor_to() (in module celldetection.util.util) Tiling (class in celldetection.util.util) TimmEncoder (class in celldetection.models.timmodels) TimmFPN (class in celldetection.models.fpn) TimmMaNet (class in celldetection.models.manet) TimmUNet (class in celldetection.models.unet) to_device() (in module celldetection.util.util) to_dict() (Config method) (Schedule method) to_dict_list() (Schedule method) to_h5() (in module celldetection.util.util) to_json() (Config method) (in module celldetection.util.util) (Schedule method) to_tensor() (in module celldetection.data.misc) to_tiff() (in module celldetection.util.util) to_txt() (Config method) train_epoch() (in module celldetection.util.util) trainable_params() (in module celldetection.util.util) training (AdditiveNoise2d attribute) (AdditiveNoise3d attribute) (BackboneAsUNet attribute) (BottleneckBlock attribute) (ConvNeXtBaseFPN attribute) (ConvNeXtBaseUNet attribute) (ConvNeXtLargeFPN attribute) (ConvNeXtLargeUNet attribute) (ConvNeXtSmallFPN attribute) (ConvNeXtSmallUNet attribute) (ConvNeXtTinyFPN attribute) (ConvNeXtTinyUNet attribute) (CPN attribute) (CpnConvNeXtBaseUNet attribute) (CpnConvNeXtLargeUNet attribute) (CpnConvNeXtSmallUNet attribute) (CpnConvNeXtTinyUNet attribute) (CpnMiTB5MaNet attribute) (CpnMobileNetV3LargeFPN attribute) (CpnMobileNetV3SmallFPN attribute) (CpnResNet101FPN attribute) (CpnResNet101UNet attribute) (CpnResNet152FPN attribute) (CpnResNet152UNet attribute) (CpnResNet18FPN attribute) (CpnResNet18UNet attribute) (CpnResNet34FPN attribute) (CpnResNet34UNet attribute) (CpnResNet50FPN attribute) (CpnResNet50UNet attribute) (CpnResNeXt101FPN attribute) (CpnResNeXt101UNet attribute) (CpnResNeXt152FPN attribute) (CpnResNeXt152UNet attribute) (CpnResNeXt50FPN attribute) (CpnResNeXt50UNet attribute) (CpnResUNet attribute) (CpnSlimU22 attribute) (CpnSmpMaNet attribute) (CpnSmpUNet attribute) (CpnTimmMaNet attribute) (CpnTimmUNet attribute) (CpnU22 attribute) (CpnWideResNet101FPN attribute) (CpnWideResNet50FPN attribute) (CpnWideU22 attribute) (EdgeFilter2d attribute) (ExtraUNetBlock attribute) (FPN attribute) (Fuse1d attribute) (Fuse2d attribute) (Fuse3d attribute) (GaussianFilter2d attribute) (GeneralizedUNet attribute) (IntermediateUNetBlock attribute) (LaplaceFilter2d attribute) (MaNet attribute) (MinibatchStdLayer attribute) (MobileNetV3LargeFPN attribute) (MobileNetV3LargeUNet attribute) (MobileNetV3SmallFPN attribute) (MobileNetV3SmallUNet attribute) (MultiscaleFusionAttention attribute) (NoAmp attribute) (Normalize attribute) (PascalFilter2d attribute) (PixelNorm attribute) (PositionWiseAttention attribute) (ReadOut attribute) (ResBlock attribute) (ResNet101FPN attribute) (ResNet101UNet attribute) (ResNet152FPN attribute) (ResNet152UNet attribute) (ResNet18FPN attribute) (ResNet18UNet attribute) (ResNet34FPN attribute) (ResNet34UNet attribute) (ResNet50FPN attribute) (ResNet50UNet attribute) (ResNeXt101FPN attribute) (ResNeXt101UNet attribute) (ResNeXt152FPN attribute) (ResNeXt152UNet attribute) (ResNeXt50FPN attribute) (ResNeXt50UNet attribute) (ResUNet attribute) (ScaledSigmoid attribute) (ScaledTanh attribute) (ScharrFilter2d attribute) (SlimU22 attribute) (SmpEncoder attribute) (SmpFPN attribute) (SmpMaNet attribute) (SmpUNet attribute) (SobelFilter2d attribute) (SpatialSplit attribute) (Stride1d attribute) (Stride2d attribute) (Stride3d attribute) (TimmEncoder attribute) (TimmFPN attribute) (TimmMaNet attribute) (TimmUNet attribute) (U12 attribute) (U17 attribute) (U22 attribute) (UNet attribute) (UpFilter2d attribute) (WideResNet101FPN attribute) (WideResNet101UNet attribute) (WideResNet50FPN attribute) (WideResNet50UNet attribute) (WideU22 attribute)

transpose_spatial() (in module celldetection.data.misc) transposed (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute) true_positive_labels (LabelMatcher property) true_positives (LabelMatcher property) tweak_module_() (in module celldetection.util.util) TwoConvNormLeaky (class in celldetection.models.commons) TwoConvNormRelu (class in celldetection.models.commons)

U

U12 (class in celldetection.models.unet) U17 (class in celldetection.models.unet) U22 (class in celldetection.models.unet) unary_masks2labels() (in module celldetection.data.segmentation) UNet (class in celldetection.models.unet) UNetEncoder (class in celldetection.models.unet) unfreeze_() (in module celldetection.util.util)

unfreeze_submodules_() (in module celldetection.util.util) UNITS (Bytes attribute) universal_dict_collate_fn() (in module celldetection.data.misc) update() (LabelMatcher method) update_dict_() (in module celldetection.util.util) update_drop_rate() (StepDropout method) UpFilter2d (class in celldetection.models.filters)

V

vec2matches() (in module celldetection.data.instance_eval)

W

WarmUp (class in celldetection.optim.lr_scheduler) weight (BoxFilter2d attribute) (Filter2d attribute) (GaussianFilter2d attribute) (LaplaceFilter2d attribute) (PascalFilter2d attribute) (ScharrFilter2d attribute) (SobelFilter2d attribute)

weight_norm_() (in module celldetection.util.util) WideResNet101_2 (class in celldetection.models.resnet) WideResNet101FPN (class in celldetection.models.fpn) WideResNet101UNet (class in celldetection.models.unet) WideResNet50_2 (class in celldetection.models.resnet) WideResNet50FPN (class in celldetection.models.fpn) WideResNet50UNet (class in celldetection.models.unet) WideU22 (class in celldetection.models.unet) wrap_module_() (in module celldetection.util.util)