CellDetection
Installation Guide
Inference Guide
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CellDetection
Index
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Index
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W
A
add() (ReplayCache method)
(Schedule method)
add_to_loss_dict() (in module celldetection.util.util)
AdditiveNoise2d (class in celldetection.models.commons)
AdditiveNoise3d (class in celldetection.models.commons)
all_filter() (in module celldetection.mpi.mpi)
append() (LabelMatcherList method)
append_hash_to_filename() (in module celldetection.util.util)
args() (Config method)
asnumpy() (in module celldetection.util.util)
avg_f1 (LabelMatcherList property)
avg_fowlkes_mallows (LabelMatcherList property)
avg_jaccard (LabelMatcherList property)
avg_precision (LabelMatcherList property)
avg_recall (LabelMatcherList property)
B
BackboneAsUNet (class in celldetection.models.unet)
base64_to_image() (in module celldetection.util.util)
batched_box_nms() (in module celldetection.ops.cpn)
batched_box_nmsi() (in module celldetection.ops.cpn)
BBBC039Test (class in celldetection.data.datasets.bbbc039)
BBBC039Train (class in celldetection.data.datasets.bbbc039)
BBBC039Val (class in celldetection.data.datasets.bbbc039)
BBBC041Test (class in celldetection.data.datasets.bbbc041)
BBBC041Train (class in celldetection.data.datasets.bbbc041)
BottleneckBlock (class in celldetection.models.commons)
boxes2masks() (in module celldetection.data.segmentation)
BoxFilter2d (class in celldetection.models.filters)
BoxNpllLoss (class in celldetection.models.loss)
Bytes (class in celldetection.util.util)
C
celldetection
module
celldetection.callbacks.dropout
module
celldetection.data
module
celldetection.data.cpn
module
celldetection.data.datasets
module
celldetection.data.datasets.bbbc039
module
celldetection.data.datasets.bbbc041
module
celldetection.data.datasets.synth
module
celldetection.data.instance_eval
module
celldetection.data.misc
module
celldetection.data.segmentation
module
celldetection.data.toydata
module
celldetection.models
module
celldetection.models.commons
module
celldetection.models.convnext
module
celldetection.models.cpn
module
celldetection.models.filters
module
celldetection.models.fpn
module
celldetection.models.loss
module
celldetection.models.manet
module
celldetection.models.mobilenetv3
module
celldetection.models.normalization
module
celldetection.models.resnet
module
celldetection.models.smp
module
celldetection.models.timmodels
module
celldetection.models.unet
module
celldetection.mpi
module
celldetection.mpi.mpi
module
celldetection.ops
module
celldetection.ops.boxes
module
celldetection.ops.commons
module
celldetection.ops.cpn
module
celldetection.ops.draw
module
celldetection.ops.loss
module
celldetection.ops.normalization
module
celldetection.optim.lr_scheduler
module
celldetection.util.schedule
module
celldetection.util.timer
module
celldetection.util.util
module
celldetection.visualization.cmaps
module
celldetection.visualization.images
module
channels_first2channels_last() (in module celldetection.data.misc)
channels_last2channels_first() (in module celldetection.data.misc)
clear() (LabelMatcherList method)
clear_cache() (LabelMatcherList method)
clip_contour_() (in module celldetection.data.cpn)
CNBlock (class in celldetection.models.convnext)
compare_file_hashes() (in module celldetection.util.util)
compute_loss() (CPN method)
conf2augmentation() (in module celldetection.util.schedule)
conf2call() (in module celldetection.util.schedule)
conf2optimizer() (in module celldetection.util.schedule)
conf2scheduler() (in module celldetection.util.schedule)
conf2tweaks_() (in module celldetection.util.schedule)
Config (class in celldetection.util.schedule)
configs (Schedule property)
contours (CPNTargetGenerator property)
contours2boxes() (in module celldetection.data.cpn)
(in module celldetection.ops.boxes)
contours2labels() (in module celldetection.data.cpn)
contours2overlay() (in module celldetection.data.cpn)
contours2properties() (in module celldetection.data.cpn)
ConvNeXt (class in celldetection.models.convnext)
ConvNeXtBase (class in celldetection.models.convnext)
ConvNeXtBaseFPN (class in celldetection.models.fpn)
ConvNeXtBaseUNet (class in celldetection.models.unet)
ConvNeXtLarge (class in celldetection.models.convnext)
ConvNeXtLargeFPN (class in celldetection.models.fpn)
ConvNeXtLargeUNet (class in celldetection.models.unet)
ConvNeXtSmall (class in celldetection.models.convnext)
ConvNeXtSmallFPN (class in celldetection.models.fpn)
ConvNeXtSmallUNet (class in celldetection.models.unet)
ConvNeXtTiny (class in celldetection.models.convnext)
ConvNeXtTinyFPN (class in celldetection.models.fpn)
ConvNeXtTinyUNet (class in celldetection.models.unet)
ConvNorm (class in celldetection.models.commons)
ConvNormRelu (class in celldetection.models.commons)
copy() (LabelMatcherList method)
copy_script() (in module celldetection.util.util)
count_submodules() (in module celldetection.util.util)
CPN (class in celldetection.models.cpn)
CpnConvNeXtBaseUNet (class in celldetection.models.cpn)
CpnConvNeXtLargeUNet (class in celldetection.models.cpn)
CpnConvNeXtSmallUNet (class in celldetection.models.cpn)
CpnConvNeXtTinyUNet (class in celldetection.models.cpn)
CpnMiTB5MaNet (class in celldetection.models.cpn)
CpnMobileNetV3LargeFPN (class in celldetection.models.cpn)
CpnMobileNetV3SmallFPN (class in celldetection.models.cpn)
CpnResNet101FPN (class in celldetection.models.cpn)
CpnResNet101UNet (class in celldetection.models.cpn)
CpnResNet152FPN (class in celldetection.models.cpn)
CpnResNet152UNet (class in celldetection.models.cpn)
CpnResNet18FPN (class in celldetection.models.cpn)
CpnResNet18UNet (class in celldetection.models.cpn)
CpnResNet34FPN (class in celldetection.models.cpn)
CpnResNet34UNet (class in celldetection.models.cpn)
CpnResNet50FPN (class in celldetection.models.cpn)
CpnResNet50UNet (class in celldetection.models.cpn)
CpnResNeXt101FPN (class in celldetection.models.cpn)
CpnResNeXt101UNet (class in celldetection.models.cpn)
CpnResNeXt152FPN (class in celldetection.models.cpn)
CpnResNeXt152UNet (class in celldetection.models.cpn)
CpnResNeXt50FPN (class in celldetection.models.cpn)
CpnResNeXt50UNet (class in celldetection.models.cpn)
CpnResUNet (class in celldetection.models.cpn)
CpnSlimU22 (class in celldetection.models.cpn)
CpnSmpMaNet (class in celldetection.models.cpn)
CpnSmpUNet (class in celldetection.models.cpn)
CPNTargetGenerator (class in celldetection.data.cpn)
CpnTimmMaNet (class in celldetection.models.cpn)
CpnTimmUNet (class in celldetection.models.cpn)
CpnU22 (class in celldetection.models.cpn)
CpnWideResNet101FPN (class in celldetection.models.cpn)
CpnWideResNet50FPN (class in celldetection.models.cpn)
CpnWideU22 (class in celldetection.models.cpn)
D
Dict (class in celldetection.util.util)
dict() (GpuStats method)
dict2model() (in module celldetection.util.util)
dict_hash() (in module celldetection.util.util)
dict_to_json_string() (in module celldetection.util.util)
distributed (LabelMatcherList property)
download_bbbc039() (in module celldetection.data.datasets.bbbc039)
download_bbbc041() (in module celldetection.data.datasets.bbbc041)
download_synth() (in module celldetection.data.datasets.synth)
downsample_labels() (in module celldetection.ops.commons)
draw_contours() (in module celldetection.data.cpn)
draw_contours_() (in module celldetection.ops.draw)
E
EdgeFilter2d (class in celldetection.models.filters)
ensure_num_tuple() (in module celldetection.util.util)
ensure_tensor() (in module celldetection.data.misc)
equal_size() (in module celldetection.ops.commons)
exponential_moving_average_() (in module celldetection.util.util)
extend() (LabelMatcherList method)
extra_repr() (Config method)
(IoULoss method)
(MinibatchStdLayer method)
(Normalize method)
ExtraUNetBlock (class in celldetection.models.unet)
F
f1 (LabelMatcher property)
(LabelMatcherList property)
f1_np (LabelMatcherList property)
false_negative_labels (LabelMatcher property)
false_negatives (LabelMatcher property)
(LabelMatcherList property)
false_positive_labels (LabelMatcher property)
false_positives (LabelMatcher property)
(LabelMatcherList property)
feed() (CPNTargetGenerator method)
fetch_image() (in module celldetection.util.util)
fetch_model() (in module celldetection.util.util)
figure2img() (in module celldetection.visualization.images)
fill_label_gaps_() (in module celldetection.data.segmentation)
fill_padding_() (in module celldetection.data.segmentation)
Filter2d (class in celldetection.models.filters)
filter_and_threshold() (LabelMatcher method)
filter_by_box_voting() (in module celldetection.ops.boxes)
filter_contours_by_intensity() (in module celldetection.data.cpn)
filter_contours_by_stitching_rule() (in module celldetection.ops.cpn)
filter_instances_() (in module celldetection.data.segmentation)
forward() (BackboneAsUNet method)
(BoxNpllLoss method)
(CNBlock method)
(CPN method)
(EdgeFilter2d method)
(ExtraUNetBlock method)
(Filter2d method)
(GeneralizedUNet method)
(IntermediateUNetBlock method)
(IoULoss method)
(MinibatchStdLayer method)
(MultiscaleFusionAttention method)
(NoAmp method)
(Normalize method)
(PixelNorm method)
(PositionWiseAttention method)
(ReadOut method)
(SelfAttention method)
(SigmoidFocalLoss method)
(SmpEncoder method)
(SpatialSplit method)
(SqueezeExcitation method)
(TimmEncoder method)
(UpFilter2d method)
fourier (CPNTargetGenerator property)
fouriers2contours() (in module celldetection.ops.cpn)
fowlkes_mallows (LabelMatcher property)
fowlkes_mallows_np (LabelMatcherList property)
FPN (class in celldetection.models.fpn)
freeze_() (in module celldetection.util.util)
freeze_submodules_() (in module celldetection.util.util)
from_file() (Config static method)
(Schedule static method)
from_files() (Config static method)
(Schedule static method)
from_h5() (in module celldetection.util.util)
from_json() (Config static method)
(in module celldetection.util.util)
(Schedule static method)
from_yaml() (Config static method)
(Schedule static method)
frozen_params() (in module celldetection.util.util)
Fuse1d (class in celldetection.models.commons)
Fuse2d (class in celldetection.models.commons)
Fuse3d (class in celldetection.models.commons)
G
gaussian_kernel() (in module celldetection.util.util)
GaussianFilter2d (class in celldetection.models.filters)
GeneralizedUNet (class in celldetection.models.unet)
get_axes() (in module celldetection.visualization.images)
get_comm() (in module celldetection.mpi.mpi)
get_device() (in module celldetection.util.util)
get_hosts() (in module celldetection.mpi.mpi)
get_installed_packages() (in module celldetection.util.util)
get_kernel1d() (PascalFilter2d static method)
get_kernel2d() (BoxFilter2d static method)
(GaussianFilter2d static method)
(LaplaceFilter2d static method)
(PascalFilter2d static method)
(ScharrFilter2d static method)
(SobelFilter2d static method)
get_last_lr() (ReduceLROnPlateau method)
get_local_comm() (in module celldetection.mpi.mpi)
get_lr() (WarmUp method)
get_multiples() (Schedule method)
get_nd_batchnorm() (in module celldetection.util.util)
get_nd_conv() (in module celldetection.util.util)
get_nd_dropout() (in module celldetection.util.util)
get_nd_linear() (in module celldetection.util.util)
get_nd_max_pool() (in module celldetection.util.util)
get_nn() (in module celldetection.util.util)
get_num_nodes() (in module celldetection.mpi.mpi)
get_pos_labels() (in module celldetection.data.instance_eval)
get_rate() (StepDropout static method)
get_resnet() (in module celldetection.models.resnet)
get_scale() (in module celldetection.ops.cpn)
get_tiling_slices() (in module celldetection.util.util)
get_warmup_factor() (in module celldetection.util.util)
glob_h5_split() (in module celldetection.util.util)
GpuStats (class in celldetection.util.util)
grouped_glob() (in module celldetection.util.util)
H
has_argument() (in module celldetection.util.util)
has_mpi() (in module celldetection.mpi.mpi)
hash() (Config method)
hash_file() (in module celldetection.util.util)
I
image_to_base64() (in module celldetection.util.util)
import_file() (in module celldetection.util.util)
imshow() (in module celldetection.visualization.images)
imshow_col() (in module celldetection.visualization.images)
imshow_grid() (in module celldetection.visualization.images)
imshow_row() (in module celldetection.visualization.images)
inject_extra_repr_() (in module celldetection.util.util)
insert() (LabelMatcherList method)
IntermediateUNetBlock (class in celldetection.models.unet)
interpolate_vector() (in module celldetection.ops.commons)
intersection_mask() (in module celldetection.data.instance_eval)
iou_loss() (in module celldetection.ops.loss)
iou_thresh (LabelMatcher property)
(LabelMatcherList property)
IoULoss (class in celldetection.models.loss)
is_empty() (ReplayCache method)
is_ipython() (in module celldetection.util.util)
is_package_installed() (in module celldetection.util.util)
iter_submodules() (in module celldetection.util.util)
J
jaccard (LabelMatcher property)
jaccard_np (LabelMatcherList property)
K
kwargs() (Config method)
L
label_cmap() (in module celldetection.visualization.cmaps)
LabelMatcher (class in celldetection.data.instance_eval)
LabelMatcherList (class in celldetection.data.instance_eval)
labels2counts() (in module celldetection.data.instance_eval)
labels2crops() (in module celldetection.data.misc)
labels2properties() (in module celldetection.data.misc)
labels2property_table() (in module celldetection.data.misc)
labels_exist() (in module celldetection.data.instance_eval)
LaplaceFilter2d (class in celldetection.models.filters)
LayerNorm1d (class in celldetection.models.commons)
LayerNorm2d (class in celldetection.models.commons)
LayerNorm3d (class in celldetection.models.commons)
length (LabelMatcherList property)
load() (Config method)
(Schedule method)
load_image() (in module celldetection.util.util)
load_imagej_rois() (in module celldetection.util.util)
load_model() (in module celldetection.util.util)
locations (CPNTargetGenerator property)
log_margin_loss() (in module celldetection.ops.loss)
lookup_nn() (in module celldetection.util.util)
M
MaNet (class in celldetection.models.manet)
margin_loss() (in module celldetection.ops.loss)
masks2labels() (in module celldetection.data.cpn)
matching_labels() (in module celldetection.data.instance_eval)
minibatch_std_layer() (in module celldetection.ops.commons)
MinibatchStdLayer (class in celldetection.models.commons)
MobileNetV3Large (class in celldetection.models.mobilenetv3)
MobileNetV3LargeFPN (class in celldetection.models.fpn)
MobileNetV3LargeUNet (class in celldetection.models.unet)
MobileNetV3Small (class in celldetection.models.mobilenetv3)
MobileNetV3SmallFPN (class in celldetection.models.fpn)
MobileNetV3SmallUNet (class in celldetection.models.unet)
model2dict() (in module celldetection.util.util)
module
celldetection
celldetection.callbacks.dropout
celldetection.data
celldetection.data.cpn
celldetection.data.datasets
celldetection.data.datasets.bbbc039
celldetection.data.datasets.bbbc041
celldetection.data.datasets.synth
celldetection.data.instance_eval
celldetection.data.misc
celldetection.data.segmentation
celldetection.data.toydata
celldetection.models
celldetection.models.commons
celldetection.models.convnext
celldetection.models.cpn
celldetection.models.filters
celldetection.models.fpn
celldetection.models.loss
celldetection.models.manet
celldetection.models.mobilenetv3
celldetection.models.normalization
celldetection.models.resnet
celldetection.models.smp
celldetection.models.timmodels
celldetection.models.unet
celldetection.mpi
celldetection.mpi.mpi
celldetection.ops
celldetection.ops.boxes
celldetection.ops.commons
celldetection.ops.cpn
celldetection.ops.draw
celldetection.ops.loss
celldetection.ops.normalization
celldetection.optim.lr_scheduler
celldetection.util.schedule
celldetection.util.timer
celldetection.util.util
celldetection.visualization.cmaps
celldetection.visualization.images
MultiscaleFusionAttention (class in celldetection.models.manet)
N
nms() (in module celldetection.ops.boxes)
NoAmp (class in celldetection.models.commons)
Normalize (class in celldetection.models.commons)
normalize_percentile() (in module celldetection.data.misc)
NormProxy (class in celldetection.util.util)
num_bytes() (in module celldetection.util.util)
num_params() (in module celldetection.util.util)
O
on_train_batch_start() (StepDropout method)
on_train_epoch_start() (StepDropout method)
order_weighting() (in module celldetection.ops.cpn)
P
pad_to_div() (in module celldetection.data.misc)
(in module celldetection.ops.commons)
pad_to_size() (in module celldetection.data.misc)
(in module celldetection.ops.commons)
padded_stack2d() (in module celldetection.ops.commons)
padding_stack() (in module celldetection.data.misc)
pairwise_box_iou() (in module celldetection.ops.boxes)
pairwise_generalized_box_iou() (in module celldetection.ops.boxes)
parse_url_params() (in module celldetection.util.util)
PascalFilter2d (class in celldetection.models.filters)
Percent (class in celldetection.util.util)
pixel_norm() (in module celldetection.ops.normalization)
PixelNorm (class in celldetection.models.normalization)
plot_box() (in module celldetection.visualization.images)
plot_boxes() (in module celldetection.visualization.images)
plot_contours() (in module celldetection.visualization.images)
plot_gif() (in module celldetection.visualization.images)
plot_mask() (in module celldetection.visualization.images)
plot_score() (in module celldetection.visualization.images)
plot_text() (in module celldetection.visualization.images)
plot_zstack() (in module celldetection.visualization.images)
pop() (LabelMatcherList method)
PositionWiseAttention (class in celldetection.models.manet)
precision (LabelMatcher property)
(LabelMatcherList property)
print_timing() (in module celldetection.util.timer)
print_to_file() (in module celldetection.util.util)
process_scores() (in module celldetection.ops.commons)
product (Schedule property)
Q
query() (in module celldetection.mpi.mpi)
quiver_plot() (in module celldetection.visualization.images)
R
r1_regularization() (in module celldetection.ops.loss)
random_circle() (in module celldetection.data.toydata)
random_code_name() (in module celldetection.util.util)
random_code_name_dir() (in module celldetection.util.util)
random_colors_hsv() (in module celldetection.visualization.cmaps)
random_crop() (in module celldetection.data.misc)
random_ellipse() (in module celldetection.data.toydata)
random_geometric_objects() (in module celldetection.data.toydata)
random_rectangle() (in module celldetection.data.toydata)
random_seed() (in module celldetection.util.util)
random_triangle() (in module celldetection.data.toydata)
ReadOut (class in celldetection.models.commons)
recall (LabelMatcher property)
(LabelMatcherList property)
recv() (in module celldetection.mpi.mpi)
reduce_loss() (in module celldetection.ops.loss)
reduce_loss_dict() (in module celldetection.util.util)
reduced_labels (CPNTargetGenerator property)
ReduceLROnPlateau (class in celldetection.optim.lr_scheduler)
refinement_bucket_weight() (in module celldetection.ops.cpn)
regionprops2d() (in module celldetection.data.misc)
rel_location2abs_location() (in module celldetection.ops.cpn)
relabel_() (in module celldetection.data.segmentation)
remove_border_contours() (in module celldetection.ops.cpn)
remove_padding() (in module celldetection.data.segmentation)
remove_partials_() (in module celldetection.data.segmentation)
render_contour() (in module celldetection.data.cpn)
replace_module_() (in module celldetection.util.util)
ReplayCache (class in celldetection.models.commons)
resample_contours() (in module celldetection.data.misc)
resampled_contours (CPNTargetGenerator property)
ResBlock (class in celldetection.models.commons)
reset_parameters() (Filter2d method)
ResNet101 (class in celldetection.models.resnet)
ResNet101FPN (class in celldetection.models.fpn)
ResNet101UNet (class in celldetection.models.unet)
ResNet152 (class in celldetection.models.resnet)
ResNet152FPN (class in celldetection.models.fpn)
ResNet152UNet (class in celldetection.models.unet)
ResNet18 (class in celldetection.models.resnet)
ResNet18FPN (class in celldetection.models.fpn)
ResNet18UNet (class in celldetection.models.unet)
ResNet34 (class in celldetection.models.resnet)
ResNet34FPN (class in celldetection.models.fpn)
ResNet34UNet (class in celldetection.models.unet)
ResNet50 (class in celldetection.models.resnet)
ResNet50FPN (class in celldetection.models.fpn)
ResNet50UNet (class in celldetection.models.unet)
ResNeXt101_32x8d (class in celldetection.models.resnet)
ResNeXt101FPN (class in celldetection.models.fpn)
ResNeXt101UNet (class in celldetection.models.unet)
ResNeXt152_32x8d (class in celldetection.models.resnet)
ResNeXt152FPN (class in celldetection.models.fpn)
ResNeXt152UNet (class in celldetection.models.unet)
ResNeXt50_32x4d (class in celldetection.models.resnet)
ResNeXt50FPN (class in celldetection.models.fpn)
ResNeXt50UNet (class in celldetection.models.unet)
resolve_label_channels() (in module celldetection.data.cpn)
resolve_model() (in module celldetection.util.util)
resolve_pretrained() (in module celldetection.util.util)
resolve_refinement_buckets() (in module celldetection.ops.cpn)
ResUNet (class in celldetection.models.unet)
rgb_to_scalar() (in module celldetection.data.misc)
rle2mask() (in module celldetection.data.misc)
S
sampled_contours (CPNTargetGenerator property)
sampled_sizes (CPNTargetGenerator property)
sampling (CPNTargetGenerator property)
save_fetchable_model() (in module celldetection.util.util)
save_fig() (in module celldetection.visualization.images)
save_requirements() (in module celldetection.util.util)
say_goodbye() (in module celldetection.util.util)
scale_contours() (in module celldetection.ops.cpn)
scale_fourier() (in module celldetection.ops.cpn)
ScaledSigmoid (class in celldetection.models.commons)
ScaledTanh (class in celldetection.models.commons)
ScharrFilter2d (class in celldetection.models.filters)
Schedule (class in celldetection.util.schedule)
SelfAttention (class in celldetection.models.commons)
send() (in module celldetection.mpi.mpi)
SequentialLR (class in celldetection.optim.lr_scheduler)
serve() (in module celldetection.mpi.mpi)
show_detection() (in module celldetection.visualization.images)
SigmoidFocalLoss (class in celldetection.models.loss)
sink() (in module celldetection.mpi.mpi)
SlimU22 (class in celldetection.models.unet)
SmpEncoder (class in celldetection.models.smp)
SmpFPN (class in celldetection.models.fpn)
SmpMaNet (class in celldetection.models.manet)
SmpUNet (class in celldetection.models.unet)
SobelFilter2d (class in celldetection.models.filters)
spatial_mean() (in module celldetection.ops.commons)
SpatialSplit (class in celldetection.models.commons)
spectral_norm_() (in module celldetection.util.util)
split() (in module celldetection.data.misc)
split_spatially() (in module celldetection.ops.commons)
SqueezeExcitation (class in celldetection.models.commons)
stack_labels() (in module celldetection.data.segmentation)
start_timer() (in module celldetection.util.timer)
step() (ReduceLROnPlateau method)
(SequentialLR method)
StepDropout (class in celldetection.callbacks.dropout)
stop_timer() (in module celldetection.util.timer)
Stride1d (class in celldetection.models.commons)
Stride2d (class in celldetection.models.commons)
Stride3d (class in celldetection.models.commons)
strided_upsampling2d() (in module celldetection.ops.commons)
SynthTest (class in celldetection.data.datasets.synth)
SynthTrain (class in celldetection.data.datasets.synth)
SynthVal (class in celldetection.data.datasets.synth)
T
tensor_to() (in module celldetection.util.util)
Tiling (class in celldetection.util.util)
TimmEncoder (class in celldetection.models.timmodels)
TimmFPN (class in celldetection.models.fpn)
TimmMaNet (class in celldetection.models.manet)
TimmUNet (class in celldetection.models.unet)
to_batched_h5() (in module celldetection.util.util)
to_device() (in module celldetection.util.util)
to_dict() (Config method)
(Schedule method)
to_dict_list() (Schedule method)
to_h5() (in module celldetection.util.util)
to_json() (Config method)
(in module celldetection.util.util)
(Schedule method)
to_tensor() (in module celldetection.data.misc)
to_tiff() (in module celldetection.util.util)
to_txt() (Config method)
to_yaml() (Config method)
(Schedule method)
train_epoch() (in module celldetection.util.util)
trainable_params() (in module celldetection.util.util)
transpose_spatial() (in module celldetection.data.misc)
true_positive_labels (LabelMatcher property)
true_positives (LabelMatcher property)
(LabelMatcherList property)
tweak_attribute_() (in module celldetection.util.util)
tweak_module_() (in module celldetection.util.util)
TwoConvNormLeaky (class in celldetection.models.commons)
TwoConvNormRelu (class in celldetection.models.commons)
U
U12 (class in celldetection.models.unet)
U17 (class in celldetection.models.unet)
U22 (class in celldetection.models.unet)
unary_masks2labels() (in module celldetection.data.segmentation)
UNet (class in celldetection.models.unet)
UNetEncoder (class in celldetection.models.unet)
unfreeze_() (in module celldetection.util.util)
unfreeze_submodules_() (in module celldetection.util.util)
UNITS (Bytes attribute)
universal_dict_collate_fn() (in module celldetection.data.misc)
update() (LabelMatcher method)
update_dict_() (in module celldetection.util.util)
update_drop_rate() (StepDropout method)
UpFilter2d (class in celldetection.models.filters)
V
vec2matches() (in module celldetection.data.instance_eval)
W
WarmUp (class in celldetection.optim.lr_scheduler)
weight_norm_() (in module celldetection.util.util)
WideResNet101_2 (class in celldetection.models.resnet)
WideResNet101FPN (class in celldetection.models.fpn)
WideResNet101UNet (class in celldetection.models.unet)
WideResNet50_2 (class in celldetection.models.resnet)
WideResNet50FPN (class in celldetection.models.fpn)
WideResNet50UNet (class in celldetection.models.unet)
WideU22 (class in celldetection.models.unet)
wrap_module_() (in module celldetection.util.util)
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